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Publications information icon

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018Publications information icon

Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009Publications information icon

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022Publications information icon

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein.

Peer-reviewed
Open access
DOI
10.1093/nar/gkx395
Morin, JA;Grzegorz, Ciesielski;Ibarra, B;Cerrón, F;Jarillo, J;Beltran-Hea, E;Ciesielski, GL;Arias-Go...
Nucleic Acids Research2017Publications information icon

Identification of the DNA-binding site of a prostate-specific and androgen receptor dependent regulatory protein

Patrikainen, Lila; Shan, Jingdong; Porvari, Katja & Vihko, Pirkko
-1998Publications information icon

Discovery of 4,5,6,7-tetrahydrobenzo[1,2-d]thiazoles as novel DNA gyrase inhibitors targeting the ATP-binding site

Peer-reviewed
DOI
10.1021/acs.jmedchem.5b00489
Tomaši¿, Tihomir; Katsamakas, Sotirios; Hodnik, Žiga; Ilaš, Janez; Brvar, Matjaž; Solmajer, Tom; Mon...
Journal of Medicinal Chemistry2015Publications information icon

DNA-Binding Specificities of Human Transcription Factors

Peer-reviewed
DOI
10.1016/j.cell.2012.12.009
Jolma, Arttu; Yan, Jian; Whitington, Thomas; Toivonen, Jarkko; Nitta, Kazuhiro R.; Rastas, Pasi; Mor...
Cell2013Publications information icon

Stability and binding affinity of DNA/chitosan complexes by polyanion competition

Peer-reviewed
Open access
DOI
10.1016/j.carbpol.2017.08.002
Ma, Pei Lian; Lavertu, Marc; Winnik, Francoise M.; Buschmann, Michael D.
Carbohydrate Polymers2017Publications information icon

MLapSVM-LBS: Predicting DNA-binding proteins via a multiple Laplacian regularized support vector machine with local behavior similarity

Peer-reviewed
Open access
DOI
10.1016/j.knosys.2022.109174
Sun, Mengwei; Tiwari, Prayag; Qian, Yuqin; Ding, Yijie; Zou, Quan
Knowledge-Based Systems2022Publications information icon

Bifunctional avidin with covalently modifiable ligand binding site

Peer-reviewed
Open access
Leppiniemi Jenni; Määttä Juha A.E; Hammaren Henrik; Soikkeli Mikko; Laitaoja Mikko; Jänis Janne; Ku...
PLoS ONE2011

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
2018

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
2022

DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein.

Peer-reviewed
Open access
DOI
10.1093/nar/gkx395
2017

Identification of the DNA-binding site of a prostate-specific and androgen receptor dependent regulatory protein

1998

Discovery of 4,5,6,7-tetrahydrobenzo[1,2-d]thiazoles as novel DNA gyrase inhibitors targeting the ATP-binding site

Peer-reviewed
DOI
10.1021/acs.jmedchem.5b00489
2015

DNA-Binding Specificities of Human Transcription Factors

Peer-reviewed
DOI
10.1016/j.cell.2012.12.009
2013

Stability and binding affinity of DNA/chitosan complexes by polyanion competition

Peer-reviewed
Open access
DOI
10.1016/j.carbpol.2017.08.002
2017

MLapSVM-LBS: Predicting DNA-binding proteins via a multiple Laplacian regularized support vector machine with local behavior similarity

Peer-reviewed
Open access
DOI
10.1016/j.knosys.2022.109174
2022

Bifunctional avidin with covalently modifiable ligand binding site

Peer-reviewed
Open access
2011